there are a few others that I can think of that have manual transmission, the problem is that you may have to sac the AWD feature since it sometimes only comes in 2WD for manual...not sure why.
the older model honda CRV's and toronto RAV-4's come to mind off the bat, also the mitsubishi outlander sport (issue though with having a CVT for 4WD but only manual option is for 2WD...)
I'm curious to see the other responses to this thread - i've been looking for a while for a 4WD small vehicle that can handle snow and dirt roads, AND HAS STANDARD TRANSMISSION, and really the only contenders are from subaru. Otherwise the older model CRV and RAV4's have it but may have to look through a lot of used car lots to find one in good shape.