Thanks for the advice. Again, months later, this issue still keeps resurfacing.
I tried a new clutch safety switch and new relays and still had no luck. Today, while it wouldn't start using the key, I was able to start it by running a piece of wire from the positive battery end to the hole that the ignition relay plugs into. Other than that, it is still intermittently starting and getting worse, often taking hundreds of attempts.
If the problem is the ignition, would this have to be fixed at a dealership? I went to Autozone and they sold it but told me I would have to have a transponder chip cut and put on the key template included with the lock or else it wont start.
P.S. - I took the aftermarket cd player out and put the stock radio back in and the issue of the window/radio turning on and off seems to have gone away.