A couple of questions, have you completely read the installation instructions, and are you sure about your connections on the 12-pin harness? The manual and wiring diagram suggest the negative parking light output is part of the 5-pin harness and not part of the 12-pin harness. Also, if you did not connect this wire to the coil ground of a parking light relay, this is not the correct wire. I would have expected that you would have tied in to a wire that is hot with the parking lights on, then connected the positive parking light output (yellow wire at pin 5 of the 5-pin secondary harness) to the circuit.
Correct the parking light circuit, make sure the antenna is plugged in, verify the fuses are still okay, and see if now you get the parking light and other appropriate indications when going through the programming.
-Rod