I haven't been able to get back to post the instructions I found a couple of days ago. To start, all of the doors but the drivers door need to be locked. Step 9 needs to be done twice. I found this at
http://www.cartrackers.com/Forums/live/Toyota/79.html and it did work for me. Thanks for replying, though. I noticed in step 10a my locks cycled twice but everything worked out fine (who knows, maybe step 9 should only be done once). None the less, both of my remotes work now so I'm happy.