coils melted,still has miss

2.0 dohc engine, both coils melted , changed them new coils plugs and wires it will now run, but very bad it is missing for sure , backfires thur intake , just pulled timing cover and everthing is good , i am a 100% sure engine is in time but acts like it is out , computer could have been wet but it does still show information on scan tool. thanks ahead of time if anyone has had this problem and know anything!!!

...computer .. does still show information on scan tool. !!!
..and what information does it show? Codes?..

had no codes , but i fixed it today unpluged the computer and it still had a ground on one of the coil connections, replaced wire from computer to coil and that was it runs great.