Keyless entry

After replacing a dead battery on my 95 trooper the keyless entry/alarm does not work. How can a fix/reprogram>

the information listed in the link posted is for 98 + rodeos and will do nothing for you but confuse you
I think your module is located under the drivers seat there is a button you have to press and hold I think for 5 seconds then release and press the lock button on your remote

Controller for remote keyless is located under the driver seat.
If you look under the driver seat from the rear seat side you will see a
green button on the rear of the controller.
1. With key in off position have someone push and hold button. (a pencil is useful here)
2. Turn key to on position
3. Security light at left of instruments will come on steady
4. Quickly push door latch button on remote
5. Security light will click and then go out
6. Turn key to off position and then back to on
7. Security light at left of instruments will come on steady again and after a few seconds start to blink
8. Push rear hatch button
9. Turn key to off position
10. Have helper release button on controller