My son lost hydraulics to his clutch slave cylinder in his 1989 Trooper 4X4 and he pulled the shifter very hard into second gear so he could make it home. I then replaced the clutch slave cylinder for him so now he has a clutch pedal again, but he only has second gear and reverse now. The shifter is about 3 inches lower than it was originally in second gear and the shifter is almost hitting the seat. Does anyone know what the problem is?